Table 2. Coefficient of correlation between RCI and MD RMSF for different combinations of random coil values and neighboring residue correction. |
Random
Coil Value |
Sequential
correction |
Correlation
Coefficient |
Schwarzinger (1) |
Schwarzinger (2) |
0.81 |
Wang (3) |
0.79 |
|
Wang (3) |
Schwarzinger (2) |
0.79 |
Wang (3) |
0.80 |
|
Wishart (4) |
Schwarzinger (2) |
0.79 |
Wang (3) |
0.81 |
|
Lukin (5) |
Schwarzinger (2) |
0.80 |
Wang (3) |
0.80 |
Reference chemical shifts published by Lukin
et al. lack proton chemical shifts and were supplemented with H and
NH chemical shifts obtained by Wang and Jardetzky (3) |
1. Schwarzinger, S., Kroon, G.J., Foss, T.R., Chung, J., Wright, P.E. and Dyson, H.J. (2001) Sequence-dependent correction of random coil NMR chemical shifts Journal of the American Chemical Society, 123, 2970-2978. 2. Schwarzinger, S., Kroon, G.J., Foss, T.R., Wright, P.E. and Dyson, H.J. (2000) Random coil chemical shifts in acidic 8 M urea: implementation of random coil shift data in NMRView J Biomol NMR, 18, 43-48. 3. Wang, Y. and Jardetzky, O. (2002) Investigation of the neighboring residue effects on protein chemical shifts J Am Chem Soc, 124, 14075-14084. 4. Wishart, D.S., Bigam, C.G., Holm, A., Hodges, R.S. and Sykes, B.D. (1995) 1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects J Biomol NMR, 5, 67-81. 5. Lukin, J.A., Gove, A.P., Talukdar, S.N. and Ho, C. (1997) Automated probabilistic method for assigning backbone resonances of (C-13,N-15)-labeled proteins Journal of Biomolecular Nmr, 9, 151-166. |